basically have your protools set to midi clock out (set bpm to your track in protools from the bpm on the fantom), on the fantom (dunno which you got) but if you got S or x6 then go to the menu and choose system set up, then choose sync/tempo, where it says sync mode set it to "Slave-Midi" that should work for you, just solo each track one by one, press play and record on the transport in protools your fantom should playback the sequence and you can track the beat...